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Table 1 Summary of representative TPD technologies related to different degradation pathways

From: Beyond canonical PROTAC: biological targeted protein degradation (bioTPD)

Pathway

TPD technologies

Target range

Composition

Advantages

Potential problems

Year

Refs

Proteasome

PROTAC

Intracellular

Small molecule/

biomacromolecule/

hybrid structure

Relatively high selectivity;

Acceptable oral bioavailability;

Clear degradation mechanism;

Catalytic and sub-stoichiometric

Poor solubility for small-molecule PROTAC;

Poor cell permeability;

Poor PK properties;

Limited target spectrum

2001

[11, 12]

 

Molecular glue

Intracellular

Small molecule

Acceptable oral bioavailability.

Difficult to design

2010

[13]

 

SNIPER

Intracellular

Small molecule

Simultaneous degradation of POIs and IAPs;

High specificity

E3 ligase IAPs dependently

2010

[14]

 

HyT

Intracellular/

extracellular

Small molecule/

Small-molecule peptide conjugate

Some hydrophobic tags are independent of E3 ligases and ubiquitination;

Wide range of potential targets;

Incomplete POIs degradation;

Unclear degradation mechanism;

Potential off-target effects

2011

[15]

 

Trim-away

Intracellular

Antibody

High specificity;

Rapid degradation speed

Need extra Trim21;

Unable to recycle

2017

[16]

Endosome-

lysosome

LYTAC

Extracellular/

membrane proteins

Antibody

Degrade extracellular and membrane proteins;

High controllability

Limited shuttle receptors;

Potential immunogenicity;

Non-catalytic;

Low degradation efficiency

2020

[17, 18]

 

AbTAC

Membrane proteins

Bispecific antibody

Degrade membrane proteins;

High specificity

Large molecular weight

2021

[19]

 

GlueTAC

Extracellular/

membrane proteins

Nanobody-peptide conjugate

High specificity;

Sufficient membrane permeability by a cell penetration peptide

Short half-life in vivo

2021

[20]

 

Bispecific Aptamer Chimeras

Membrane proteins

Aptamer

Easy to design and prepare;

Good stability

Low delivery efficacy;

Short half-life in vivo

2021

[21]

 

Sweeping antibody

Extracellular

Antibody

Allow recycling;

Required engineering for each target

2013

[22]

 

Seldegs

IgG

Antigen-Fc

fusion proteins

Degrade autoantibodies;

Lower dose

Required engineering for each target;

Antigen selection

2017

[23]

Autophagy-lysosome

CMA-based degrader

Intracellular/

membrane proteins/aggregates

Chimeric polypeptides.

High specificity;

High degradation efficacy

Low delivery efficacy;

Low stability;

Limited therapeutic effects;

2014

[24]

 

AUTAC

Intracellular/

damaged organelles

Small molecule-poly(A) oligonucleotide conjugate

A wide range of potential targets;

Proteasome-independent

Low degradation speed;

Potential off-target effects;

Dependent on K63 ubiquitination;

2019

[25]

 

ATTAC

Intracellular/

non-protein

Small molecule

A wide range of potential targets;

Blood-brain barrier permeability;

Difficult to design

2019

[26, 27]

 

AUTOTAC

Intracellular/

protein aggregates

Small molecule

Degrade protein aggregates

Low degradation speed

2022

[28]

Ribonuclease

RIBOTAC

RNA

Small molecule/small molecule-poly(A) oligonucleotide conjugate

Expand targeted range to RNA;

High degradation efficacy

Difficulties in finding specific ligands for targeting RNA

2018

[29, 30]

ClpCP proteases

BacPROTAC

Bacterial proteins

Small molecule/small molecule-peptide conjugate

Expand the targeted range to bacterial protein

Low efficiency

2022

[8]

  1. Abbreviations: POI, Protein of interest; IAPs, Inhibitor of apoptosis protein; HyT, Hydrophobic Tag; PROTAC, Proteolysis Targeting Chimeras; TPD, Targeted protein degradation; PK, Pharmacokinetics; SNIPER, Specific and Non-genetic IAP-dependent Protein Erasers; Trim21, Tripartite motif-containing protein 21; LYTAC, Lysosome-targeting chimeras; AbTAC, Antibody-based PROTAC; IgG, immunoglobulin G; CMA, Chaperone mediated autophagy; AUTAC, Autophagy-targeting chimera; ATTAC, Autophagy-tethering compounds; AUTOTAC, AUTOphagy-TArgeting Chimera; RIBOTAC, Ribonuclease targeting chimera